EMBL Barcelona, C/ Dr. Aiguader, 88, PRBB Building, 08003 Barcelona, Spain
ORCID iD: 
0000-0003-3805-0073
Publications
Total: 34 publication(s)
2020
Tielemans B, Dekoster K, Verleden SE, Sawall S, Leszczyński B, Laperre K, Vanstapel A, Verschakelen J, Kachelriess M, Verbeken E, Swoger J, Vande Velde G. (2020)
From mouse to man and back: Closing the correlation gap between imaging and histopathology for lung diseases.
Diagnostics (Basel) 10(9) doi: 10.3390/diagnostics10090636
Europe PMC | doi
2018
Mayer J, Robert-Moreno A, Sharpe J, Swoger J. (2018)
Attenuation artifacts in light sheet fluorescence microscopy corrected by OPTiSPIM.
Light Sci Appl 7 doi: 10.1038/s41377-018-0068-z
Europe PMC | doi
Martínez-Abadías N, Mateu Estivill R, Sastre Tomas J, Motch Perrine S, Yoon M, Robert-Moreno A, Swoger J, Russo L, Kawasaki K, Richtsmeier J, Sharpe J. (2018)
Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis.
Elife 7 doi: 10.7554/eLife.36405
Europe PMC | doi
2016
Ozga AJ, Moalli F, Abe J, Swoger J, Sharpe J, Zehn D, Kreutzfeldt M, Merkler D, Ripoll J, Stein JV. (2016)
pMHC affinity controls duration of CD8+ T cell-DC interactions and imprints timing of effector differentiation versus expansion.
J Exp Med 213(12):2811-2829. doi: 10.1084/jem.20160206
Europe PMC | doi
2015
Saias L, Swoger J, D'Angelo A, Hayes P, Colombelli J, Sharpe J, Salbreux G, Solon J. (2015)
Decrease in Cell Volume Generates Contractile Forces Driving Dorsal Closure.
Dev. Cell 33(5) doi: 10.1016/j.devcel.2015.03.016
Europe PMC | doi
2014
Mayer J, Robert-Moreno A, Danuser R, Stein JV, Sharpe J, Swoger J. (2014)
OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts.
Opt Lett 39(4):1053-1056. doi: 10.1364/OL.39.001053
Europe PMC | doi
2013
Pinto-Teixeira F, Muzzopappa M, Swoger J, Mineo A, Sharpe J, López-Schier H. (2013)
Intravital imaging of hair-cell development and regeneration in the zebrafish.
Front Neuroanat 7(33) doi: 10.3389/fnana.2013.00033
Europe PMC | doi
Coelho FM, Natale D, Soriano SF, Hons M, Swoger J, Mayer J, Danuser R, Scandella E, Pieczyk M, Zerwes HG, Junt T, Sailer AW, Ludewig B, Sharpe J, Figge MT, Stein JV. (2013)
Naive B-cell trafficking is shaped by local chemokine availability and LFA-1-independent stromal interactions.
Blood 121(20):4101-4109. doi: 10.1182/blood-2012-10-465336
Europe PMC | doi
2012
Mayer J, Swoger J, Ozga AJ, Stein JV, Sharpe J. (2012)
Quantitative measurements in 3-dimensional datasets of mouse lymph nodes resolve organ-wide functional dependencies.
Comput Math Methods Med 2012 doi: 10.1155/2012/128431
Europe PMC | doi
Olarte OE, Licea-Rodriguez J, Palero JA, Gualda EJ, Artigas D, Mayer J, Swoger J, Sharpe J, Rocha-Mendoza I, Rangel-Rojo R, Loza-Alvarez P. (2012)
Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles.
Biomed Opt Express 3(7):1492-1505. doi: 10.1364/BOE.3.001492
Europe PMC | doi
2011
Boistel R, Swoger J, Krzic U, Fernandez V, Gillet B, Reynaud EG. (2011)
The future of three-dimensional microscopic imaging in marine biology
Mar. Ecol. 32(4):438-452. doi: 10.1111/j.1439-0485.2011.00442.x
Europe PMC | doi
Swoger J, Muzzopappa M, Lopez-Schier H, Sharpe J. (2011)
4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies
J BIOPHOTONICS 4(1-2):122-134. doi: 10.1002/jbio.201000087
Europe PMC | doi
2010
Boehm B, Westerberg H, Lesnicar-Pucko G, Raja S, Rautschka M, Cotterell J, Swoger J, Sharpe J. (2010)
The role of spatially controlled cell proliferation in limb bud morphogenesis.
PLOS BIOL 8(7) doi: 10.1371/journal.pbio.1000420
Europe PMC | doi
2008
McGinty J, Tahir KR, Laine R, Talbot CB, Dunsby C, Neil MAA, Quintana L, Swoger J, Sharpe J, French PMW. (2008)
Fluorescence lifetime optical projection tomography
J BIOPHOTONICS 1(5):390-394. doi: 10.1002/jbio.200810044
Europe PMC | doi
2007
Swoger J, Verveer P, Greger K, Huisken J, Stelzer EH. (2007)
Multi-view image fusion improves resolution in three-dimensional microscopy
Opt Express 15(13):8029-8042. doi: 10.1364/oe.15.008029
Europe PMC | doi
Huisken J, Swoger J, Stelzer EH. (2007)
Three-dimensional optical manipulation using four collimated intersecting laser beams
Opt Express 15(8):4921-4928. doi: 10.1364/oe.15.004921
Europe PMC | doi
Verveer PJ, Swoger J, Pampaloni F, Greger K, Marcello M, Stelzer EH. (2007)
High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy
Nat. Methods 4(4):311-313. doi: 10.1038/nmeth1017
Europe PMC | doi
Greger K, Swoger J, Stelzer EH. (2007)
Basic building units and properties of a fluorescence single plane illumination microscope
Rev Sci Instrum 78(2):023705. doi: 10.1063/1.2428277
Europe PMC | doi
2004
Huisken J, Swoger J, Del Bene F, Wittbrodt J, Stelzer EH. (2004)
Optical sectioning deep inside live embryos by selective plane illumination microscopy
Science 305(5686):1007-1009. doi: 10.1126/science.1100035
Europe PMC | doi
Huisken J, Swoger J, Stelzer EHK. (2004)
Active particle manipulation with four laser beams.
In: Nicolau DV et al., Proceedings Volume 5322, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues II; (2004), vol 5322. SPIE.doi: 10.1117/12.529171
doi
2003
Swoger J, Huisken J, Stelzer EH. (2003)
Multiple imaging axis microscopy improves resolution for thick-sample applications
Opt Lett 28(18):1654-1656. doi: 10.1364/ol.28.001654
Europe PMC | doi
Jonkman JE, Swoger J, Kress H, Rohrbach A, Stelzer EH. (2003)
Resolution in optical microscopy
Meth. Enzymol. 360:416-446. doi: 10.1016/s0076-6879(03)60122-9
Europe PMC | doi
2002
Swoger J, Martínez-Corral M, Huisken J, Stelzer EH. (2002)
Optical scanning holography as a technique for high-resolution three-dimensional biological microscopy
J Opt Soc Am A Opt Image Sci Vis 19(9):1910-1918. doi: 10.1364/josaa.19.001910
Europe PMC | doi
Martinez-Corral M, Caballero M, Stelzer EH, Swoger J. (2002)
Tailoring the axial shape of the point spread function using the Toraldo concept
Opt Express 10(1):98-103. doi: 10.1364/OE.10.000098
Europe PMC | doi
1999
Haar FM, Swoger J, Stelzer EHK. (1999)
Developments and applications of confocal theta microscopy.
In: Cabib D et al., Developments and applications of confocal theta microscopy, vol 3605.doi: 10.1117/12.347589
doi
Swoger JH, Simmons JG, Thompson DA. (1999)
Modelling of optical pumping in split-electrode semiconductor lasers
IEE P-OPTOELECTRON 146(3):159-164. doi: 10.1049/ip-opt:19990577
doi
Lindek S, Swoger J, Stelzer EHK. (1999)
Single-lens theta microscopy: resolution, efficiency and working distance
J MOD OPTIC 46(5):843-858. doi: 10.1080/09500349908231308
doi
1998
Swoger JH, Simmons JG, Thompson DA. (1998)
Modelling of self-sustained pulsations in non-uniformly pumped semiconductor lasers
IEE P-OPTOELECTRON 145(4):217-222. doi: 10.1049/ip-opt:19982142
doi
Swoger J, Lindek S, Stefany T, Haar FM, Stelzer EHK. (1998)
A confocal fiber-coupled single-lens theta microscope
REV SCI INSTRUM 69(8):2956-2963. doi: 10.1063/1.1149040
doi
1995
Swoger JH, Simmons JG, Shepherd FR, Thompson DA, Beckett D, Cleroux MN. (1995)
Spontaneous oscillations in the InP-InGaAsP lasing optoelectronic switch (LOES)
IEEE J QUANTUM ELECT 31(7):1308-1314. doi: 10.1109/3.391096
doi
1994
Swoger JH, Qiu C, Simmons JG, Thompson DA, Shepherd F, Beckett D, Cleroux. (1994)
Strained layer (1.5 μm) InP/InGaAsP lasing opto-electronic switch (LOES)
IEEE PHOTONIC TECH L 6(8):927-929. doi: 10.1109/68.313054
doi
1993
Swoger JH, Kovacic SJ. (1993)
Enhanced luminescence due to impact ionization in photodiodes.
J APPL PHYS 74(4):2565-2571. doi: 10.1063/1.354702
doi
Swoger J, Simmons JG. (1993)
Electrical and optical properties of the four-terminal double-heterostructure opto-electronic switch
IEEE T ELECTRON DEV 40(6):1071-1080. doi: 10.1109/16.214731
doi
1992
Kovacic SJ, Ojha JJ, Swoger JH, Simmons JG, Noël J-P, Houghton DC. (1992)
On transconductance in the p-channel Si/SiGe heteroj unction field effect transistor
CAN J PHYS 70(10-11):963-968. doi: 10.1139/p92-154
doi