EMBL Barcelona, C/ Dr. Aiguader, 88, PRBB Building, 08003 Barcelona, Spain

ORCID iD: iD icon0000-0003-3805-0073


Total: 34 publication(s)


Tielemans B, Dekoster K, Verleden SE, Sawall S, Leszczyński B, Laperre K, Vanstapel A, Verschakelen J, Kachelriess M, Verbeken E, Swoger J, Vande Velde G. (2020)

From mouse to man and back: Closing the correlation gap between imaging and histopathology for lung diseases.

Diagnostics (Basel) 10(9) doi: 10.3390/diagnostics10090636
Europe PMC | doi


Mayer J, Robert-Moreno A, Sharpe J, Swoger J. (2018)

Attenuation artifacts in light sheet fluorescence microscopy corrected by OPTiSPIM.

Light Sci Appl 7 doi: 10.1038/s41377-018-0068-z
Europe PMC | doi

Martínez-Abadías N, Mateu Estivill R, Sastre Tomas J, Motch Perrine S, Yoon M, Robert-Moreno A, Swoger J, Russo L, Kawasaki K, Richtsmeier J, Sharpe J. (2018)

Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis.

Elife 7 doi: 10.7554/eLife.36405
Europe PMC | doi


Ozga AJ, Moalli F, Abe J, Swoger J, Sharpe J, Zehn D, Kreutzfeldt M, Merkler D, Ripoll J, Stein JV. (2016)

pMHC affinity controls duration of CD8+ T cell-DC interactions and imprints timing of effector differentiation versus expansion.

J Exp Med 213(12):2811-2829. doi: 10.1084/jem.20160206
Europe PMC | doi


Saias L, Swoger J, D'Angelo A, Hayes P, Colombelli J, Sharpe J, Salbreux G, Solon J. (2015)

Decrease in Cell Volume Generates Contractile Forces Driving Dorsal Closure.

Dev. Cell 33(5) doi: 10.1016/j.devcel.2015.03.016
Europe PMC | doi


Mayer J, Robert-Moreno A, Danuser R, Stein JV, Sharpe J, Swoger J. (2014)

OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts.

Opt Lett 39(4):1053-1056. doi: 10.1364/OL.39.001053
Europe PMC | doi


Pinto-Teixeira F, Muzzopappa M, Swoger J, Mineo A, Sharpe J, López-Schier H. (2013)

Intravital imaging of hair-cell development and regeneration in the zebrafish.

Front Neuroanat 7(33) doi: 10.3389/fnana.2013.00033
Europe PMC | doi

Coelho FM, Natale D, Soriano SF, Hons M, Swoger J, Mayer J, Danuser R, Scandella E, Pieczyk M, Zerwes HG, Junt T, Sailer AW, Ludewig B, Sharpe J, Figge MT, Stein JV. (2013)

Naive B-cell trafficking is shaped by local chemokine availability and LFA-1-independent stromal interactions.

Blood 121(20):4101-4109. doi: 10.1182/blood-2012-10-465336
Europe PMC | doi


Mayer J, Swoger J, Ozga AJ, Stein JV, Sharpe J. (2012)

Quantitative measurements in 3-dimensional datasets of mouse lymph nodes resolve organ-wide functional dependencies.

Comput Math Methods Med 2012 doi: 10.1155/2012/128431
Europe PMC | doi

Olarte OE, Licea-Rodriguez J, Palero JA, Gualda EJ, Artigas D, Mayer J, Swoger J, Sharpe J, Rocha-Mendoza I, Rangel-Rojo R, Loza-Alvarez P. (2012)

Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles.

Biomed Opt Express 3(7):1492-1505. doi: 10.1364/BOE.3.001492
Europe PMC | doi


Boistel R, Swoger J, Krzic U, Fernandez V, Gillet B, Reynaud EG. (2011)

The future of three-dimensional microscopic imaging in marine biology

Mar. Ecol. 32(4):438-452. doi: 10.1111/j.1439-0485.2011.00442.x
Europe PMC | doi

Swoger J, Muzzopappa M, Lopez-Schier H, Sharpe J. (2011)

4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies

J BIOPHOTONICS 4(1-2):122-134. doi: 10.1002/jbio.201000087
Europe PMC | doi


Boehm B, Westerberg H, Lesnicar-Pucko G, Raja S, Rautschka M, Cotterell J, Swoger J, Sharpe J. (2010)

The role of spatially controlled cell proliferation in limb bud morphogenesis.

PLOS BIOL 8(7) doi: 10.1371/journal.pbio.1000420
Europe PMC | doi


McGinty J, Tahir KR, Laine R, Talbot CB, Dunsby C, Neil MAA, Quintana L, Swoger J, Sharpe J, French PMW. (2008)

Fluorescence lifetime optical projection tomography

J BIOPHOTONICS 1(5):390-394. doi: 10.1002/jbio.200810044
Europe PMC | doi


Swoger J, Verveer P, Greger K, Huisken J, Stelzer EH. (2007)

Multi-view image fusion improves resolution in three-dimensional microscopy

Opt Express 15(13):8029-8042. doi: 10.1364/oe.15.008029
Europe PMC | doi

Huisken J, Swoger J, Stelzer EH. (2007)

Three-dimensional optical manipulation using four collimated intersecting laser beams

Opt Express 15(8):4921-4928. doi: 10.1364/oe.15.004921
Europe PMC | doi

Verveer PJ, Swoger J, Pampaloni F, Greger K, Marcello M, Stelzer EH. (2007)

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy

Nat. Methods 4(4):311-313. doi: 10.1038/nmeth1017
Europe PMC | doi

Greger K, Swoger J, Stelzer EH. (2007)

Basic building units and properties of a fluorescence single plane illumination microscope

Rev Sci Instrum 78(2):023705. doi: 10.1063/1.2428277
Europe PMC | doi


Huisken J, Swoger J, Del Bene F, Wittbrodt J, Stelzer EH. (2004)

Optical sectioning deep inside live embryos by selective plane illumination microscopy

Science 305(5686):1007-1009. doi: 10.1126/science.1100035
Europe PMC | doi

Huisken J, Swoger J, Stelzer EHK. (2004)

Active particle manipulation with four laser beams.

In: Nicolau DV et al., Proceedings Volume 5322, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues II; (2004), vol 5322. SPIE.doi: 10.1117/12.529171


Swoger J, Huisken J, Stelzer EH. (2003)

Multiple imaging axis microscopy improves resolution for thick-sample applications

Opt Lett 28(18):1654-1656. doi: 10.1364/ol.28.001654
Europe PMC | doi

Jonkman JE, Swoger J, Kress H, Rohrbach A, Stelzer EH. (2003)

Resolution in optical microscopy

Meth. Enzymol. 360:416-446. doi: 10.1016/s0076-6879(03)60122-9
Europe PMC | doi


Swoger J, Martínez-Corral M, Huisken J, Stelzer EH. (2002)

Optical scanning holography as a technique for high-resolution three-dimensional biological microscopy

J Opt Soc Am A Opt Image Sci Vis 19(9):1910-1918. doi: 10.1364/josaa.19.001910
Europe PMC | doi

Martinez-Corral M, Caballero M, Stelzer EH, Swoger J. (2002)

Tailoring the axial shape of the point spread function using the Toraldo concept

Opt Express 10(1):98-103. doi: 10.1364/OE.10.000098
Europe PMC | doi


Haar FM, Swoger J, Stelzer EHK. (1999)

Developments and applications of confocal theta microscopy.

In: Cabib D et al., Developments and applications of confocal theta microscopy, vol 3605.doi: 10.1117/12.347589

Swoger JH, Simmons JG, Thompson DA. (1999)

Modelling of optical pumping in split-electrode semiconductor lasers

IEE P-OPTOELECTRON 146(3):159-164. doi: 10.1049/ip-opt:19990577

Lindek S, Swoger J, Stelzer EHK. (1999)

Single-lens theta microscopy: resolution, efficiency and working distance

J MOD OPTIC 46(5):843-858. doi: 10.1080/09500349908231308


Swoger JH, Simmons JG, Thompson DA. (1998)

Modelling of self-sustained pulsations in non-uniformly pumped semiconductor lasers

IEE P-OPTOELECTRON 145(4):217-222. doi: 10.1049/ip-opt:19982142

Swoger J, Lindek S, Stefany T, Haar FM, Stelzer EHK. (1998)

A confocal fiber-coupled single-lens theta microscope

REV SCI INSTRUM 69(8):2956-2963. doi: 10.1063/1.1149040


Swoger JH, Simmons JG, Shepherd FR, Thompson DA, Beckett D, Cleroux MN. (1995)

Spontaneous oscillations in the InP-InGaAsP lasing optoelectronic switch (LOES)

IEEE J QUANTUM ELECT 31(7):1308-1314. doi: 10.1109/3.391096


Swoger JH, Qiu C, Simmons JG, Thompson DA, Shepherd F, Beckett D, Cleroux. (1994)

Strained layer (1.5 μm) InP/InGaAsP lasing opto-electronic switch (LOES)

IEEE PHOTONIC TECH L 6(8):927-929. doi: 10.1109/68.313054


Swoger JH, Kovacic SJ. (1993)

Enhanced luminescence due to impact ionization in photodiodes.

J APPL PHYS 74(4):2565-2571. doi: 10.1063/1.354702

Swoger J, Simmons JG. (1993)

Electrical and optical properties of the four-terminal double-heterostructure opto-electronic switch

IEEE T ELECTRON DEV 40(6):1071-1080. doi: 10.1109/16.214731


Kovacic SJ, Ojha JJ, Swoger JH, Simmons JG, Noël J-P, Houghton DC. (1992)

On transconductance in the p-channel Si/SiGe heteroj unction field effect transistor

CAN J PHYS 70(10-11):963-968. doi: 10.1139/p92-154